SNP Report
Basic Infomation
| Name | rs6065892 dbSNP |
|---|---|
| Location | chr:20,44411308 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2064504 | 0.84[ASN][1000 genomes] |
| rs2077004 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2138546 | 0.87[ASN][1000 genomes] |
| rs2664529 | 0.82[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2664591 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2868349 | 0.85[ASN][1000 genomes] |
| rs368622 | 0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs3746493 | 0.85[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs3746494 | 0.86[ASN][1000 genomes] |
| rs377770 | 0.90[AFR][1000 genomes];0.84[ASN][1000 genomes] |
| rs399672 | 0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs411945 | 0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs426384 | 0.80[EUR][1000 genomes] |
| rs4625980 | 0.91[ASN][1000 genomes] |
| rs567348 | 0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6017692 | 0.91[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6032524 | 0.82[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs6032530 | 0.86[ASN][1000 genomes] |
| rs6032532 | 0.85[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6032534 | 0.85[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6032535 | 0.86[ASN][1000 genomes] |
| rs6032536 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6032537 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6032538 | 0.94[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6032544 | 0.85[ASN][1000 genomes] |
| rs6032548 | 0.85[ASN][1000 genomes] |
| rs6065893 | 0.85[AFR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6073905 | 0.84[ASN][1000 genomes] |
| rs6073906 | 0.84[ASN][1000 genomes] |
| rs6073910 | 0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6104349 | 0.82[ASN][1000 genomes] |
| rs6124742 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC3 | Proximal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| ENSG00000221046 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014