SNP Report
Basic Infomation
| Name | rs8860 dbSNP |
|---|---|
| Location | chr:20,44451901 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037551 | 0.86[EUR][1000 genomes] |
| rs174745 | 0.81[CHB][hapmap] |
| rs197669 | 0.81[CHB][hapmap];0.90[LWK][hapmap];0.84[MKK][hapmap] |
| rs197671 | 0.81[CHB][hapmap] |
| rs2064504 | 0.95[CHB][hapmap];0.81[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2077004 | 0.85[ASN][1000 genomes] |
| rs2664529 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2664591 | 0.84[ASN][1000 genomes] |
| rs2742654 | 0.84[AFR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2868349 | 0.85[ASN][1000 genomes] |
| rs368622 | 0.81[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs370237 | 1.00[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs373018 | 0.86[CHB][hapmap];0.91[CHD][hapmap] |
| rs3746493 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs3746494 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs3761156 | 0.83[CEU][hapmap];0.81[TSI][hapmap] |
| rs377770 | 0.82[ASN][1000 genomes] |
| rs379059 | 0.87[AFR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs380397 | 0.82[ASW][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.88[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs380973 | 0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3848711 | 0.81[CEU][hapmap];0.86[CHB][hapmap] |
| rs386155 | 0.82[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.93[GIH][hapmap];0.93[LWK][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs399672 | 0.82[ASW][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.97[LWK][hapmap];0.97[MKK][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes] |
| rs411945 | 0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs426384 | 0.88[ASW][hapmap];0.86[CHB][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.83[MKK][hapmap];0.86[YRI][hapmap] |
| rs4337538 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs437122 | 0.94[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.88[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4629 | 0.86[CHB][hapmap];0.91[CHD][hapmap] |
| rs567348 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.87[MKK][hapmap];0.84[ASN][1000 genomes] |
| rs6017692 | 0.84[ASN][1000 genomes] |
| rs6032524 | 0.82[ASN][1000 genomes] |
| rs6032530 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs6032532 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs6032534 | 0.83[ASN][1000 genomes] |
| rs6032535 | 0.84[ASN][1000 genomes] |
| rs6032536 | 0.94[CHB][hapmap];0.92[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs6032537 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.84[LWK][hapmap];0.83[MKK][hapmap];0.84[ASN][1000 genomes] |
| rs6032538 | 0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs6032544 | 0.95[CHB][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs6032548 | 0.85[ASN][1000 genomes] |
| rs6065893 | 0.84[ASN][1000 genomes] |
| rs6073905 | 0.95[CHB][hapmap];0.83[CHD][hapmap];0.84[GIH][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6073906 | 0.82[ASN][1000 genomes] |
| rs6073910 | 0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs6104350 | 0.81[CHB][hapmap] |
| rs6104355 | 0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap] |
| rs6104374 | 0.81[CEU][hapmap] |
| rs6124742 | 0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs8116061 | 0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8116218 | 0.83[CEU][hapmap];0.81[TSI][hapmap] |
| rs811657 | 0.86[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNC2 | Proximal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014