SNP Report
Basic Infomation
| Name | rs6104355 dbSNP |
|---|---|
| Location | chr:20,44445676 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12624645 | 0.84[EUR][1000 genomes] |
| rs13037551 | 0.94[ASN][1000 genomes] |
| rs2064504 | 0.82[CHB][hapmap] |
| rs232286 | 0.82[GIH][hapmap] |
| rs2664529 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs2664539 | 0.83[ASN][1000 genomes] |
| rs370237 | 0.82[CHB][hapmap] |
| rs373018 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3746493 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs3746494 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs378710 | 0.89[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs380397 | 0.82[CHB][hapmap] |
| rs380973 | 0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap] |
| rs383112 | 0.82[EUR][1000 genomes] |
| rs3848711 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs386155 | 0.82[CHB][hapmap] |
| rs390386 | 0.91[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs399672 | 0.82[CHB][hapmap] |
| rs411945 | 0.82[CHB][hapmap] |
| rs437122 | 0.82[CHB][hapmap] |
| rs445503 | 1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4629 | 0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4638862 | 0.85[CEU][hapmap] |
| rs558554 | 0.82[EUR][1000 genomes] |
| rs567348 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs6017653 | 0.81[GIH][hapmap] |
| rs6032530 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs6032531 | 0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs6032532 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs6032537 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs6032538 | 0.82[CHB][hapmap] |
| rs6032541 | 0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.85[ASN][1000 genomes] |
| rs6032544 | 0.81[CHB][hapmap] |
| rs6032545 | 0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs6065886 | 0.82[ASN][1000 genomes] |
| rs6073905 | 0.82[CHB][hapmap];0.80[CHD][hapmap] |
| rs6073910 | 0.82[CHB][hapmap] |
| rs6104350 | 0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap];0.88[ASN][1000 genomes] |
| rs6104374 | 0.95[CEU][hapmap] |
| rs6124741 | 0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs6124746 | 0.82[EUR][1000 genomes] |
| rs6130929 | 0.83[ASN][1000 genomes] |
| rs6514065 | 0.84[CEU][hapmap] |
| rs811657 | 0.94[ASN][1000 genomes] |
| rs8860 | 0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap] |
| rs910396 | 0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF335 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014