SNP Report

Basic Infomation

Name	rs6104355 dbSNP
Location	chr:20,44445676
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 46)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12624645	0.84[EUR][1000 genomes]
rs13037551	0.94[ASN][1000 genomes]
rs2064504	0.82[CHB][hapmap]
rs232286	0.82[GIH][hapmap]
rs2664529	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs2664539	0.83[ASN][1000 genomes]
rs370237	0.82[CHB][hapmap]
rs373018	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3746493	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs3746494	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs378710	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs380397	0.82[CHB][hapmap]
rs380973	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs383112	0.82[EUR][1000 genomes]
rs3848711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs386155	0.82[CHB][hapmap]
rs390386	0.91[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs399672	0.82[CHB][hapmap]
rs411945	0.82[CHB][hapmap]
rs437122	0.82[CHB][hapmap]
rs445503	1.00[CEU][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4629	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4638862	0.85[CEU][hapmap]
rs558554	0.82[EUR][1000 genomes]
rs567348	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs6017653	0.81[GIH][hapmap]
rs6032530	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs6032531	0.90[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6032532	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs6032537	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs6032538	0.82[CHB][hapmap]
rs6032541	0.91[CHB][hapmap];0.89[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.85[ASN][1000 genomes]
rs6032544	0.81[CHB][hapmap]
rs6032545	0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs6065886	0.82[ASN][1000 genomes]
rs6073905	0.82[CHB][hapmap];0.80[CHD][hapmap]
rs6073910	0.82[CHB][hapmap]
rs6104350	0.95[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.85[LWK][hapmap];0.81[MKK][hapmap];0.88[ASN][1000 genomes]
rs6104374	0.95[CEU][hapmap]
rs6124741	0.91[CHB][hapmap];0.89[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs6124746	0.82[EUR][1000 genomes]
rs6130929	0.83[ASN][1000 genomes]
rs6514065	0.84[CEU][hapmap]
rs811657	0.94[ASN][1000 genomes]
rs8860	0.81[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap]
rs910396	0.93[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZNF335	Distal transcriptional regulation
PCIF1	Distal transcriptional regulation
ACOT8	Distal transcriptional regulation
ZSWIM3	Distal transcriptional regulation
TNNC2	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 8)

eQTL related gene	Source
DNTTIP1	SCAN
SNX21	SCAN
ZSWIM3	SCAN
CTSA	SCAN
MATN4	SCAN
ACOT8	SCAN
PREX1	SCAN
C20orf165	SCAN