SNP Report
Basic Infomation
| Name | rs6017653 dbSNP |
|---|---|
| Location | chr:20,44336924 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs232259 | 0.83[JPT][hapmap] |
| rs232262 | 0.86[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs232263 | 0.93[ASN][1000 genomes] |
| rs232267 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232268 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232270 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232285 | 0.94[ASN][1000 genomes] |
| rs232286 | 0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs232290 | 0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs232291 | 0.85[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs390386 | 0.86[GIH][hapmap] |
| rs6032449 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032454 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032467 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032468 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6032469 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032541 | 0.83[GIH][hapmap] |
| rs6032545 | 0.86[GIH][hapmap] |
| rs6094202 | 0.89[EUR][1000 genomes] |
| rs6104350 | 0.86[GIH][hapmap] |
| rs6104355 | 0.81[GIH][hapmap] |
| rs6124741 | 0.86[GIH][hapmap];0.81[TSI][hapmap] |
| rs980984 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC13 | Proximal transcriptional regulation |
| WFDC10B | Proximal transcriptional regulation |
| MIR3617 | Proximal transcriptional regulation |
| WFDC13 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014