SNP Report
Basic Infomation
| Name | rs232263 dbSNP |
|---|---|
| Location | chr:20,44350728 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs232259 | 0.88[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs232262 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs232267 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs232268 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs232270 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs232285 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs232286 | 0.93[ASN][1000 genomes] |
| rs232290 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs232291 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6017653 | 0.93[ASN][1000 genomes] |
| rs6032449 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6032454 | 0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6032467 | 0.93[ASN][1000 genomes] |
| rs6032468 | 0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6032469 | 0.90[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6094202 | 0.88[EUR][1000 genomes] |
| rs980984 | 0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT4 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014