SNP Report
Basic Infomation
| Name | rs6032467 dbSNP |
|---|---|
| Location | chr:20,44347577 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs232262 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs232263 | 0.93[ASN][1000 genomes] |
| rs232267 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232268 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232270 | 0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs232285 | 0.94[ASN][1000 genomes] |
| rs232286 | 0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs232290 | 0.81[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs232291 | 0.80[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6017653 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032449 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032454 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032468 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6032469 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6094202 | 0.89[EUR][1000 genomes] |
| rs980984 | 0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT4 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014