SNP Report
Basic Infomation
| Name | rs4337538 dbSNP |
|---|---|
| Location | chr:20,44466270 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13037551 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs174745 | 0.80[ASN][1000 genomes] |
| rs197669 | 0.95[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs197670 | 0.86[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs197671 | 0.94[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs2064504 | 0.84[ASN][1000 genomes] |
| rs2077004 | 0.88[ASN][1000 genomes] |
| rs2664529 | 0.84[ASN][1000 genomes] |
| rs2664591 | 0.86[ASN][1000 genomes] |
| rs2742654 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs2868349 | 0.88[ASN][1000 genomes] |
| rs2868358 | 0.87[AFR][1000 genomes];0.80[AMR][1000 genomes] |
| rs368622 | 0.88[ASN][1000 genomes] |
| rs370237 | 0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3746493 | 0.86[ASN][1000 genomes] |
| rs3746494 | 0.86[ASN][1000 genomes] |
| rs377770 | 0.84[ASN][1000 genomes] |
| rs379059 | 0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs380397 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs380973 | 0.86[AFR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs386155 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs399672 | 0.88[ASN][1000 genomes] |
| rs411945 | 0.86[ASN][1000 genomes] |
| rs437122 | 0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs567348 | 0.86[ASN][1000 genomes] |
| rs6017692 | 0.86[ASN][1000 genomes] |
| rs6032524 | 0.84[ASN][1000 genomes] |
| rs6032530 | 0.86[ASN][1000 genomes] |
| rs6032532 | 0.86[ASN][1000 genomes] |
| rs6032534 | 0.86[ASN][1000 genomes] |
| rs6032535 | 0.86[ASN][1000 genomes] |
| rs6032536 | 0.86[ASN][1000 genomes] |
| rs6032537 | 0.86[ASN][1000 genomes] |
| rs6032538 | 0.86[ASN][1000 genomes] |
| rs6032544 | 0.88[ASN][1000 genomes] |
| rs6032548 | 0.88[ASN][1000 genomes] |
| rs6065893 | 0.86[ASN][1000 genomes] |
| rs6073905 | 0.84[ASN][1000 genomes] |
| rs6073906 | 0.84[ASN][1000 genomes] |
| rs6073910 | 0.86[ASN][1000 genomes] |
| rs6124742 | 0.84[ASN][1000 genomes] |
| rs6130945 | 0.86[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs8116061 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs811657 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs8860 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNC2 | Proximal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| SNX21 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014