SNP Report
Basic Infomation
| Name | rs1487320 dbSNP |
|---|---|
| Location | chr:20,44236987 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1157672 | 0.95[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs1487322 | 0.94[ASN][1000 genomes] |
| rs1487323 | 0.95[ASN][1000 genomes] |
| rs2179457 | 0.95[ASN][1000 genomes] |
| rs232262 | 0.81[CEU][hapmap] |
| rs2425723 | 0.93[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs2425724 | 0.95[ASN][1000 genomes] |
| rs2425732 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs2425733 | 0.88[ASN][1000 genomes] |
| rs2425734 | 0.88[ASN][1000 genomes] |
| rs3091838 | 0.94[ASN][1000 genomes] |
| rs3091839 | 0.81[ASN][1000 genomes] |
| rs3091917 | 0.94[ASN][1000 genomes] |
| rs3092029 | 0.81[ASN][1000 genomes] |
| rs3092373 | 0.89[ASN][1000 genomes] |
| rs3092666 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes] |
| rs4812943 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs6017637 | 0.99[ASN][1000 genomes] |
| rs6032449 | 0.81[CEU][hapmap] |
| rs6094202 | 0.81[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| H2AFZ | Distal transcriptional regulation |
| ENSG00000245322 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014