SNP Report

Basic Infomation

Name	rs2425723 dbSNP
Location	chr:20,44258932
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1157672	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1487320	0.93[CHB][hapmap];0.82[JPT][hapmap];0.95[ASN][1000 genomes]
rs1487322	0.97[AFR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1487323	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103658	0.84[CEU][hapmap]
rs2179457	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2425724	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2425732	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2425733	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2425734	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2868312	0.88[EUR][1000 genomes]
rs3091838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3091839	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3091917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3092029	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3092373	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3092666	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812943	0.86[CHB][hapmap];0.82[JPT][hapmap];0.96[ASN][1000 genomes]
rs6017637	0.96[ASN][1000 genomes]
rs6032271	0.85[CEU][hapmap];0.85[CHB][hapmap]
rs6032274	0.89[CEU][hapmap]
rs6073781	0.87[EUR][1000 genomes]
rs6124715	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs66480369	0.80[EUR][1000 genomes]
rs68074252	0.80[EUR][1000 genomes]
rs719998	0.88[EUR][1000 genomes]
rs765156	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs988463	0.85[CEU][hapmap];0.84[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
WFDC9	RNA binding protein mediated regulation
WFDC10A	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)