SNP Report

Basic Infomation

Name	rs2103658 dbSNP
Location	chr:20,44161281
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 26)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1157672	0.83[CEU][hapmap]
rs2092369	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2143221	0.92[CEU][hapmap];0.85[CHB][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];0.80[TSI][hapmap];0.85[ASN][1000 genomes]
rs2143224	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2143225	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2425723	0.84[CEU][hapmap]
rs2425732	0.84[CEU][hapmap];0.88[TSI][hapmap]
rs3092666	0.83[CEU][hapmap]
rs6017583	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6017589	0.92[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6017597	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017598	0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6017599	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032227	0.85[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6032238	0.92[CEU][hapmap]
rs6032260	0.84[CEU][hapmap]
rs6032267	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032271	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032274	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.80[YRI][hapmap];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6073781	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6094159	0.88[CEU][hapmap];0.81[MEX][hapmap];0.81[AMR][1000 genomes]
rs6124715	0.88[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6130852	0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs719998	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs765156	0.88[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs988463	0.83[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000232135	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 10)

eQTL related gene	Source
RCBTB2	SCAN
DNTTIP1	Pritchard
WFDC3	Pritchard
DNTTIP1	SCAN
ZSWIM3	SCAN
CTSA	SCAN
ACOT8	SCAN
L3MBTL1	SCAN
GTSF1L	SCAN
CDH22	SCAN