SNP Report
Basic Infomation
| Name | rs6017598 dbSNP |
|---|---|
| Location | chr:20,44160890 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 27)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2092369 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2103658 | 0.84[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.93[MEX][hapmap];0.95[TSI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2143221 | 0.96[CEU][hapmap];0.85[CHB][hapmap];0.98[GIH][hapmap];0.89[JPT][hapmap];0.80[TSI][hapmap];0.85[ASN][1000 genomes] |
| rs2143224 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2143225 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2425732 | 0.88[TSI][hapmap] |
| rs6017583 | 0.84[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6017589 | 0.96[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6017597 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6017599 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032227 | 0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6032238 | 0.96[CEU][hapmap] |
| rs6032259 | 0.83[LWK][hapmap];0.86[YRI][hapmap] |
| rs6032260 | 0.88[CEU][hapmap] |
| rs6032263 | 0.84[AFR][1000 genomes] |
| rs6032264 | 0.84[AFR][1000 genomes] |
| rs6032266 | 0.89[ASW][hapmap];0.89[LWK][hapmap] |
| rs6032267 | 0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032271 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032274 | 0.92[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6073781 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6094159 | 0.84[CEU][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes] |
| rs6124715 | 0.84[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6130852 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs719998 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs765156 | 0.84[CEU][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs988463 | 0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000232135 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 10)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014