SNP Report
Basic Infomation
| Name | rs6032260 dbSNP |
|---|---|
| Location | chr:20,44142375 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2103658 | 0.84[CEU][hapmap] |
| rs2143221 | 0.84[CEU][hapmap] |
| rs6017589 | 0.84[CEU][hapmap] |
| rs6017598 | 0.88[CEU][hapmap] |
| rs6032238 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.90[TSI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6032271 | 0.83[CEU][hapmap] |
| rs6032274 | 0.80[CEU][hapmap] |
| rs6065828 | 0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6073758 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6094159 | 0.96[CEU][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs6130852 | 0.88[CEU][hapmap];0.82[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014