SNP Report
Basic Infomation
| Name | rs6094159 dbSNP |
|---|---|
| Location | chr:20,44164091 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2092369 | 0.80[AMR][1000 genomes] |
| rs2103658 | 0.88[CEU][hapmap];0.81[MEX][hapmap];0.81[AMR][1000 genomes] |
| rs2143221 | 0.81[CEU][hapmap] |
| rs2143225 | 0.81[AMR][1000 genomes] |
| rs6017589 | 0.81[CEU][hapmap] |
| rs6017598 | 0.84[CEU][hapmap];0.88[MEX][hapmap];0.80[TSI][hapmap];0.80[AMR][1000 genomes] |
| rs6017599 | 0.80[AMR][1000 genomes] |
| rs6032238 | 0.88[CEU][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap] |
| rs6032260 | 0.96[CEU][hapmap];0.83[CHD][hapmap];0.85[GIH][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs6032267 | 0.80[AMR][1000 genomes] |
| rs6032271 | 0.88[CEU][hapmap];0.80[AMR][1000 genomes] |
| rs6032274 | 0.84[CEU][hapmap];0.88[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes] |
| rs6032275 | 1.00[YRI][hapmap];0.91[AFR][1000 genomes] |
| rs6124715 | 0.81[MEX][hapmap] |
| rs6130852 | 0.84[CEU][hapmap];0.81[MEX][hapmap] |
| rs765156 | 0.81[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC6 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 7)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014