SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1487312	0.89[CEU][hapmap]
rs1487318	0.92[CEU][hapmap]
rs1487324	0.89[CEU][hapmap]
rs1825776	0.89[CEU][hapmap]
rs1843817	0.89[CEU][hapmap]
rs2050095	0.84[EUR][1000 genomes]
rs2425720	0.88[CEU][hapmap]
rs2425721	0.89[CEU][hapmap]
rs3092443	0.85[CEU][hapmap]
rs3092506	0.83[CEU][hapmap]
rs3092516	0.89[CEU][hapmap]
rs35051068	0.92[EUR][1000 genomes]
rs35801736	0.86[EUR][1000 genomes]
rs4402827	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6017625	0.80[CEU][hapmap]
rs6032259	0.85[CEU][hapmap]
rs6032264	0.85[CEU][hapmap]
rs6032266	0.85[CEU][hapmap];0.81[AMR][1000 genomes]
rs6032276	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6032308	0.85[CEU][hapmap]
rs6032339	0.85[CEU][hapmap]
rs6032340	0.85[CEU][hapmap]
rs6032343	0.86[CEU][hapmap]
rs6032346	0.82[CEU][hapmap]
rs6032409	0.92[CEU][hapmap]
rs6032445	0.89[CEU][hapmap]
rs6073773	0.89[CEU][hapmap]
rs6094159	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs6094171	0.89[CEU][hapmap]
rs62205589	0.90[EUR][1000 genomes]
rs7264976	0.84[CEU][hapmap]
rs742422	0.87[EUR][1000 genomes]
rs742423	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8124864	0.94[EUR][1000 genomes]
rs8125061	0.87[EUR][1000 genomes]
rs909879	0.82[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
PIGT	Distal transcriptional regulation
WFDC6	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 0)