SNP Report

Basic Infomation

Name	rs6073773 dbSNP
Location	chr:20,44147951
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 25)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1487312	0.92[CEU][hapmap]
rs1487318	0.89[CEU][hapmap]
rs1487324	0.85[CEU][hapmap]
rs1825776	0.85[CEU][hapmap]
rs1843817	0.85[CEU][hapmap]
rs2425702	0.81[AMR][1000 genomes]
rs2425720	0.84[CEU][hapmap]
rs2425721	0.85[CEU][hapmap]
rs3092443	0.81[CEU][hapmap]
rs3092516	0.85[CEU][hapmap];0.85[AMR][1000 genomes]
rs4402827	0.89[CEU][hapmap]
rs6017593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032259	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032263	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032264	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032265	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032266	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032275	0.89[CEU][hapmap]
rs6032276	0.89[CEU][hapmap]
rs6032308	0.96[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6032346	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6032409	0.88[CEU][hapmap]
rs6032445	0.92[CEU][hapmap]
rs6094171	0.85[CEU][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs909879	0.92[CEU][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
SPINT3	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)