SNP Report

Basic Infomation

Name	rs4402827 dbSNP
Location	chr:20,44161982
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 52)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1005455	0.85[ASW][hapmap];0.82[GIH][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.89[TSI][hapmap]
rs1487312	0.88[CEU][hapmap]
rs1487318	0.92[CEU][hapmap];0.89[MEX][hapmap]
rs1487324	0.89[CEU][hapmap]
rs1569615	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1825776	0.89[CEU][hapmap];0.88[MEX][hapmap]
rs1843817	0.89[CEU][hapmap];0.89[MEX][hapmap]
rs2050095	0.89[TSI][hapmap]
rs2250860	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs2425720	0.87[CEU][hapmap]
rs2425721	0.88[CEU][hapmap]
rs3091845	0.81[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3092443	0.84[CEU][hapmap]
rs3092506	0.82[CEU][hapmap]
rs3092516	0.89[CEU][hapmap]
rs35051068	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35801736	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6017618	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6032259	0.85[CEU][hapmap]
rs6032264	0.85[CEU][hapmap]
rs6032266	0.85[CEU][hapmap]
rs6032275	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs6032276	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6032301	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6032305	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6032308	0.84[CEU][hapmap]
rs6032318	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6032321	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6032322	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs6032339	0.84[CEU][hapmap]
rs6032340	0.84[CEU][hapmap]
rs6032343	0.85[CEU][hapmap];0.91[GIH][hapmap];0.91[TSI][hapmap];0.81[EUR][1000 genomes]
rs6032346	0.82[CEU][hapmap]
rs6032409	0.92[CEU][hapmap]
rs6032445	0.88[CEU][hapmap]
rs6073773	0.89[CEU][hapmap]
rs6094171	0.89[CEU][hapmap]
rs6104214	0.80[EUR][1000 genomes]
rs62205589	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62205623	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62207162	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6514012	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs7264976	0.84[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7273669	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7274563	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs742422	0.85[EUR][1000 genomes]
rs742423	0.83[EUR][1000 genomes]
rs8122982	0.91[GIH][hapmap];0.89[TSI][hapmap]
rs8124864	0.92[EUR][1000 genomes]
rs8125061	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs909879	0.82[CEU][hapmap]
rs988462	0.88[GIH][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000232135	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
GPX7	SCAN
ELMO2	SCAN
UBE2C	SCAN
SERINC3	SCAN