SNP Report

Basic Infomation

Name	rs6032346 dbSNP
Location	chr:20,44208504
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11697671	0.81[ASN][1000 genomes]
rs1487312	0.92[CEU][hapmap]
rs1487318	0.89[CEU][hapmap];0.91[TSI][hapmap]
rs1487324	0.85[CEU][hapmap]
rs1825776	0.85[CEU][hapmap];0.95[TSI][hapmap]
rs1843817	0.85[CEU][hapmap];0.95[TSI][hapmap]
rs2425702	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2425703	0.84[EUR][1000 genomes]
rs2425720	0.84[CEU][hapmap]
rs2425721	0.85[CEU][hapmap]
rs3092443	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3092516	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4402827	0.82[CEU][hapmap]
rs4434050	0.81[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs6017593	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6032259	0.89[CEU][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap]
rs6032263	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6032264	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6032265	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6032266	0.89[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6032275	0.82[CEU][hapmap]
rs6032276	0.82[CEU][hapmap]
rs6032308	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6032347	1.00[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.97[ASN][1000 genomes]
rs6032349	0.81[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs6032350	0.81[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs6032389	0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs6032409	0.92[CEU][hapmap]
rs6032445	0.92[CEU][hapmap]
rs6073773	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6094171	0.93[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6094182	0.81[ASN][1000 genomes]
rs6104239	0.81[CHB][hapmap];0.84[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes]
rs6104289	0.86[JPT][hapmap]
rs6104296	0.87[JPT][hapmap]
rs909879	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
WFDC8	Proximal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
ZSWIM3	SCAN
ACOT8	SCAN
MMP9	SCAN
NEURL2	SCAN