SNP Report

Basic Infomation

Name	rs6032409 dbSNP
Location	chr:20,44280048
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1118484	0.87[EUR][1000 genomes]
rs1352261	0.87[EUR][1000 genomes]
rs1487312	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1487318	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1487324	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1825776	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1843817	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2425703	0.83[EUR][1000 genomes]
rs2425717	0.88[EUR][1000 genomes]
rs2425718	0.88[EUR][1000 genomes]
rs2425720	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs2425721	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs3092443	0.92[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs3092506	0.82[CEU][hapmap]
rs3092516	1.00[CEU][hapmap]
rs3092769	0.87[EUR][1000 genomes]
rs4402827	0.92[CEU][hapmap]
rs6032259	0.85[CEU][hapmap]
rs6032264	0.85[CEU][hapmap]
rs6032266	0.85[CEU][hapmap]
rs6032275	0.92[CEU][hapmap]
rs6032276	0.92[CEU][hapmap]
rs6032308	0.92[CEU][hapmap]
rs6032339	0.84[CEU][hapmap]
rs6032340	0.84[CEU][hapmap]
rs6032343	0.85[CEU][hapmap]
rs6032346	0.92[CEU][hapmap]
rs6032429	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6032430	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6032445	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6073773	0.88[CEU][hapmap]
rs6094171	1.00[CEU][hapmap]
rs7264976	0.84[CEU][hapmap]
rs909879	0.93[CEU][hapmap]

rSNP related genes

Symbol	Regulation type
WFDC10A	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)