SNP Report
Basic Infomation
| Name | rs2425703 dbSNP |
|---|---|
| Location | chr:20,44221766 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1118484 | 0.94[EUR][1000 genomes] |
| rs1352261 | 0.94[EUR][1000 genomes] |
| rs1487324 | 0.94[EUR][1000 genomes] |
| rs1825776 | 0.94[EUR][1000 genomes] |
| rs1843817 | 0.94[EUR][1000 genomes] |
| rs2425702 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2425717 | 0.95[EUR][1000 genomes] |
| rs2425718 | 0.95[EUR][1000 genomes] |
| rs2425720 | 0.94[EUR][1000 genomes] |
| rs2425721 | 0.94[EUR][1000 genomes] |
| rs3091440 | 0.85[EUR][1000 genomes] |
| rs3092443 | 0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs3092516 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs3092769 | 0.94[EUR][1000 genomes] |
| rs6032308 | 0.84[EUR][1000 genomes] |
| rs6032346 | 0.84[EUR][1000 genomes] |
| rs6032409 | 0.83[EUR][1000 genomes] |
| rs6094171 | 0.90[EUR][1000 genomes] |
| rs909879 | 0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| WFDC10A | Distal transcriptional regulation |
| EPPIN | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014