SNP Report
Basic Infomation
| Name | rs6032259 dbSNP |
|---|---|
| Location | chr:20,44141331 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1487312 | 0.89[CEU][hapmap] |
| rs1487318 | 0.85[CEU][hapmap] |
| rs1487324 | 0.82[CEU][hapmap] |
| rs1825776 | 0.82[CEU][hapmap];0.82[TSI][hapmap] |
| rs1843817 | 0.82[CEU][hapmap];0.82[TSI][hapmap] |
| rs2425720 | 0.84[CEU][hapmap] |
| rs2425721 | 0.85[CEU][hapmap] |
| rs3092516 | 0.81[CEU][hapmap];0.82[AMR][1000 genomes] |
| rs4402827 | 0.85[CEU][hapmap] |
| rs6017593 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6017598 | 0.83[LWK][hapmap];0.86[YRI][hapmap] |
| rs6032263 | 0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6032264 | 1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6032265 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6032266 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.96[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6032275 | 0.85[CEU][hapmap] |
| rs6032276 | 0.85[CEU][hapmap] |
| rs6032308 | 0.92[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs6032346 | 0.89[CEU][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap] |
| rs6032409 | 0.85[CEU][hapmap] |
| rs6032445 | 0.89[CEU][hapmap] |
| rs6073773 | 0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6094171 | 0.81[CEU][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes] |
| rs742423 | 0.81[AMR][1000 genomes] |
| rs909879 | 0.89[CEU][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014