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rVarBase
SNP Report
Basic Infomation
Name
rs742423  
dbSNP
Location
chr:20,44127678
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs35801736
0.86[EUR][1000 genomes]
rs4402827
0.83[EUR][1000 genomes]
rs6032226
0.84[EUR][1000 genomes]
rs6032259
0.81[AMR][1000 genomes]
rs6032275
0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6032276
0.86[EUR][1000 genomes]
rs62205589
0.84[EUR][1000 genomes]
rs742422
0.97[EUR][1000 genomes]
rs8124864
0.91[EUR][1000 genomes]
rs8125061
0.83[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
SPINT3
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)