SNP Report
Basic Infomation
| Name | rs8124864 dbSNP |
|---|---|
| Location | chr:20,44144478 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2050095 | 0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2231829 | 0.86[ASN][1000 genomes] |
| rs35051068 | 0.89[EUR][1000 genomes] |
| rs35801736 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3746593 | 0.96[ASN][1000 genomes] |
| rs4402827 | 0.92[EUR][1000 genomes] |
| rs6032226 | 0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs6032262 | 0.97[ASN][1000 genomes] |
| rs6032275 | 0.94[EUR][1000 genomes] |
| rs6032276 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs62205589 | 0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs742422 | 0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs742423 | 0.91[EUR][1000 genomes] |
| rs8125061 | 0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT3 | Proximal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014