SNP Report

Basic Infomation

Name	rs6073781 dbSNP
Location	chr:20,44185500
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 35)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1157672	0.87[EUR][1000 genomes]
rs1487322	0.88[EUR][1000 genomes]
rs1487323	0.87[EUR][1000 genomes]
rs2092369	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2103658	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2143224	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2143225	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2179457	0.87[EUR][1000 genomes]
rs2425723	0.87[EUR][1000 genomes]
rs2425724	0.86[EUR][1000 genomes]
rs2425732	0.87[EUR][1000 genomes]
rs2425733	0.87[EUR][1000 genomes]
rs2425734	0.87[EUR][1000 genomes]
rs3091838	0.87[EUR][1000 genomes]
rs3091839	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3091917	0.87[EUR][1000 genomes]
rs3092029	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3092373	0.87[EUR][1000 genomes]
rs3092666	0.87[EUR][1000 genomes]
rs6017589	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6017597	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6017598	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6017599	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6032227	0.81[AMR][1000 genomes]
rs6032267	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6032271	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6032274	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6032308	0.86[AFR][1000 genomes]
rs6094171	0.86[AFR][1000 genomes]
rs6124715	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6130852	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs719998	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs765156	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs909879	0.88[AFR][1000 genomes]
rs988463	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RNA5SP485	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)