SNP Report
Basic Infomation
| Name | rs988463 dbSNP |
|---|---|
| Location | chr:20,44178972 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 34)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1157672 | 0.87[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1487322 | 0.85[EUR][1000 genomes] |
| rs1487323 | 0.84[EUR][1000 genomes] |
| rs2092369 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2103658 | 0.83[CEU][hapmap];0.80[CHB][hapmap];0.94[JPT][hapmap];0.87[MEX][hapmap];0.88[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2143221 | 0.80[GIH][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap] |
| rs2143224 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2143225 | 0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2179457 | 0.84[EUR][1000 genomes] |
| rs2425723 | 0.85[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs2425724 | 0.83[EUR][1000 genomes] |
| rs2425732 | 0.88[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs2425733 | 0.83[EUR][1000 genomes] |
| rs2425734 | 0.83[EUR][1000 genomes] |
| rs3091838 | 0.84[EUR][1000 genomes] |
| rs3091839 | 0.86[EUR][1000 genomes] |
| rs3091917 | 0.84[EUR][1000 genomes] |
| rs3092029 | 0.85[EUR][1000 genomes] |
| rs3092373 | 0.84[EUR][1000 genomes] |
| rs3092666 | 0.91[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6017583 | 0.85[AMR][1000 genomes] |
| rs6017589 | 0.80[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6017597 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6017598 | 0.80[CHB][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6017599 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6032227 | 0.87[AMR][1000 genomes] |
| rs6032267 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6032271 | 0.83[CEU][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6032274 | 0.88[CEU][hapmap];0.90[CHB][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.90[TSI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6073781 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6124715 | 0.93[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.92[LWK][hapmap];0.87[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6130852 | 0.80[CHB][hapmap];0.88[JPT][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs719998 | 0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs765156 | 0.93[ASW][hapmap];0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.88[LWK][hapmap];0.87[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| EPPIN | Proximal transcriptional regulation |
| EPPIN-WFDC6 | Proximal transcriptional regulation |
| EPPIN | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014