SNP Report
Basic Infomation
| Name | rs2425732 dbSNP |
|---|---|
| Location | chr:20,44270415 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1157672 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1487320 | 0.95[CHB][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs1487322 | 0.92[AFR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs1487323 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2103658 | 0.84[CEU][hapmap];0.88[TSI][hapmap] |
| rs2143221 | 0.83[TSI][hapmap] |
| rs2179457 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2425723 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2425724 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2425733 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2425734 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs2868312 | 0.88[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs3091838 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3091839 | 0.98[EUR][1000 genomes] |
| rs3091917 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs3092029 | 0.98[EUR][1000 genomes] |
| rs3092373 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3092666 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4812943 | 0.91[CHB][hapmap];0.91[ASN][1000 genomes] |
| rs6017598 | 0.88[TSI][hapmap] |
| rs6017637 | 0.91[ASN][1000 genomes] |
| rs6032271 | 0.83[CEU][hapmap] |
| rs6032274 | 0.88[CEU][hapmap];0.90[TSI][hapmap] |
| rs6073781 | 0.87[EUR][1000 genomes] |
| rs6124715 | 0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs6130852 | 0.92[TSI][hapmap] |
| rs66480369 | 0.80[EUR][1000 genomes] |
| rs67297650 | 0.81[ASN][1000 genomes] |
| rs68074252 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs719998 | 0.88[EUR][1000 genomes] |
| rs765156 | 0.96[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes] |
| rs988463 | 0.88[CEU][hapmap];0.84[GIH][hapmap];0.95[TSI][hapmap];0.84[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RPS2P7 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 11)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014