SNP Report
Name | rs438865   dbSNP |
---|---|
Location | chr:20,44375144 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1386504 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1386505 | 0.88[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs1487317 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2021501 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2425748 | 0.86[EUR][1000 genomes] |
rs2425749 | 0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs376206 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs377921 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs380421 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs400622 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs454402 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs455451 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs456212 | 0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs459955 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs460043 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs460096 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs460733 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs462145 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs464318 | 0.86[EUR][1000 genomes] |
rs465246 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6017663 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6017664 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6017665 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6017666 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6017667 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6032471 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6032472 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6032473 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6032474 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6073888 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs61527625 | 0.85[AMR][1000 genomes];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
SPINT5P | Proximal transcriptional regulation |
HNRNPA1P3 | Proximal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014