SNP Report
Basic Infomation
| Name | rs465246 dbSNP |
|---|---|
| Location | chr:20,44375615 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs2425749 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs376206 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs377921 | 0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs380421 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs400622 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs438865 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs454402 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs455451 | 0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs456212 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs459955 | 0.88[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs460043 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs460096 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs460733 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs462145 | 0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6073888 | 0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SPINT5P | Proximal transcriptional regulation |
| HNRNPA1P3 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014