SNP Report
Basic Infomation
| Name | rs3848719 dbSNP |
|---|---|
| Location | chr:20,44596545 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10854235 | 0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11569624 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs11696196 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11696623 | 1.00[CEU][hapmap];0.80[YRI][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs11697323 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs11906879 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.80[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11907457 | 0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs13040315 | 1.00[CEU][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs34293711 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs3848714 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs3848715 | 0.82[CEU][hapmap] |
| rs3859611 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4638862 | 0.90[LWK][hapmap] |
| rs4810477 | 0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs4812980 | 0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs62213345 | 0.85[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs7275164 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF335 | Proximal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ZNF335 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014