SNP Report
Basic Infomation
| Name | rs3859611 dbSNP |
|---|---|
| Location | chr:20,44579750 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10854235 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11569624 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs11696196 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11696623 | 0.92[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs11697323 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11906879 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11907457 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs13040315 | 0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2297195 | 0.95[ASN][1000 genomes] |
| rs34293711 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3737063 | 0.99[ASN][1000 genomes] |
| rs3746504 | 1.00[ASN][1000 genomes] |
| rs3848714 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3848719 | 0.88[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs4810477 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4812980 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs55851513 | 0.97[ASN][1000 genomes] |
| rs57644161 | 0.97[ASN][1000 genomes] |
| rs62213345 | 0.83[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs7275164 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73622634 | 1.00[ASN][1000 genomes] |
| rs73622635 | 0.97[ASN][1000 genomes] |
| rs73622636 | 0.99[ASN][1000 genomes] |
| rs73622638 | 0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SNX13 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZNF335 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014