SNP Report
Basic Infomation
| Name | rs2297195 dbSNP |
|---|---|
| Location | chr:20,44600459 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13040315 | 0.94[ASN][1000 genomes] |
| rs34293711 | 0.96[ASN][1000 genomes] |
| rs3737063 | 0.96[ASN][1000 genomes] |
| rs3746504 | 0.95[ASN][1000 genomes] |
| rs3859611 | 0.95[ASN][1000 genomes] |
| rs55851513 | 0.94[ASN][1000 genomes] |
| rs57644161 | 0.94[ASN][1000 genomes] |
| rs73622634 | 0.95[ASN][1000 genomes] |
| rs73622635 | 0.94[ASN][1000 genomes] |
| rs73622636 | 0.96[ASN][1000 genomes] |
| rs73622638 | 0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF335 | Proximal transcriptional regulation |
| PM20D2 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC35C2 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| KAT6B | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| FTLP1 | Distal transcriptional regulation |
| ZNF335 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014