SNP Report
Basic Infomation
| Name | rs3848715 dbSNP |
|---|---|
| Location | chr:20,44564682 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696196 | 0.82[CEU][hapmap];0.89[TSI][hapmap] |
| rs11696623 | 0.82[CEU][hapmap] |
| rs11906879 | 0.82[CEU][hapmap];0.89[TSI][hapmap] |
| rs13040315 | 0.82[CEU][hapmap];0.89[TSI][hapmap] |
| rs3848714 | 0.82[CEU][hapmap] |
| rs3848719 | 0.82[CEU][hapmap] |
| rs394643 | 0.81[GIH][hapmap];0.81[TSI][hapmap] |
| rs4141957 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs4810478 | 0.95[ASN][1000 genomes] |
| rs4810480 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4810481 | 0.97[ASN][1000 genomes] |
| rs4812976 | 0.98[ASN][1000 genomes] |
| rs4812977 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6017713 | 0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6032592 | 1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6032606 | 0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs6032610 | 0.91[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs6065909 | 0.90[ASN][1000 genomes] |
| rs6073955 | 0.94[ASN][1000 genomes] |
| rs62213344 | 1.00[ASN][1000 genomes] |
| rs7275164 | 0.82[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNNC2 | Distal transcriptional regulation |
| SPATA25 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| FTLP1 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| ENSG00000221046 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC35C2 | Distal transcriptional regulation |
| PCIF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014