SNP Report
Basic Infomation
| Name | rs4141957 dbSNP |
|---|---|
| Location | chr:20,44564114 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1810323 | 0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2250889 | 1.00[CEU][hapmap] |
| rs2282073 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3746507 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3746510 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs3848715 | 1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs3848716 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3848717 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4810478 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4810480 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4810481 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs4812976 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4812977 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4812979 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6017713 | 0.92[ASN][1000 genomes] |
| rs6017715 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6017716 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6032592 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032606 | 1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6032610 | 1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6032611 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6032619 | 1.00[CEU][hapmap] |
| rs6065909 | 0.91[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6065910 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs6073955 | 0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6073969 | 0.89[AMR][1000 genomes] |
| rs6104398 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs62213344 | 0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC7A6OS | Distal transcriptional regulation |
| PRMT7 | Distal transcriptional regulation |
| ZC3H12A | Distal transcriptional regulation |
| ENSG00000231485 | Distal transcriptional regulation |
| ZBTB4 | Distal transcriptional regulation |
| POLR2A | Distal transcriptional regulation |
| KLF11 | Distal transcriptional regulation |
| PTGER4 | Distal transcriptional regulation |
| FBXW2 | Distal transcriptional regulation |
| ENSG00000214654 | Distal transcriptional regulation |
| PTGR1 | Distal transcriptional regulation |
| DNTTIP1 | Distal transcriptional regulation |
| UBE2C | Distal transcriptional regulation |
| TNNC2 | Distal transcriptional regulation |
| SPATA25 | Distal transcriptional regulation |
| NEURL2 | Distal transcriptional regulation |
| CTSA | Distal transcriptional regulation |
| PLTP | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| FTLP1 | Distal transcriptional regulation |
| SNX21 | Distal transcriptional regulation |
| ZSWIM3 | Distal transcriptional regulation |
| ZSWIM1 | Distal transcriptional regulation |
| ACOT8 | Distal transcriptional regulation |
| KRT18 | Distal transcriptional regulation |
| KRT8 | Distal transcriptional regulation |
| EPPIN | Distal transcriptional regulation |
| EPPIN-WFDC6 | Distal transcriptional regulation |
| WFDC3 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| DDX6 | Distal transcriptional regulation |
| ENSG00000221046 | Distal transcriptional regulation |
| SLC35C2 | Distal transcriptional regulation |
| KDM4C | Distal transcriptional regulation |
| PCIF1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014