SNP Report
Basic Infomation
| Name | rs4812979 dbSNP |
|---|---|
| Location | chr:20,44583238 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17576 | 0.95[JPT][hapmap] |
| rs1810323 | 0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2250889 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs2282073 | 1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3746505 | 0.84[ASN][1000 genomes] |
| rs3746507 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3746510 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3848716 | 0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3848717 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3918249 | 0.95[JPT][hapmap] |
| rs4141957 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4810478 | 0.87[AMR][1000 genomes] |
| rs4810480 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[LWK][hapmap];0.95[MKK][hapmap];0.87[AMR][1000 genomes] |
| rs4810481 | 0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4810482 | 0.95[JPT][hapmap] |
| rs4812976 | 0.85[AMR][1000 genomes] |
| rs4812977 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6017715 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6017716 | 0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6032592 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[LWK][hapmap];0.82[MEX][hapmap];0.97[MKK][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6032606 | 1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6032610 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.88[AMR][1000 genomes] |
| rs6032611 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6032619 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs6065909 | 0.84[AMR][1000 genomes] |
| rs6065910 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs6073955 | 0.87[AMR][1000 genomes] |
| rs6073969 | 0.97[AMR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6104398 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.89[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs62213344 | 0.90[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZNF335 | Distal transcriptional regulation |
| ZNF335 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014