SNP Report
Name | rs6017715   dbSNP |
---|---|
Location | chr:20,44599839 |
Allele | G/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs17576 | 0.94[JPT][hapmap] |
rs1810323 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs2250889 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
rs2282073 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs3746505 | 0.85[ASN][1000 genomes] |
rs3746507 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3746510 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3848716 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3848717 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3918249 | 0.94[JPT][hapmap] |
rs4141957 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4810478 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4810480 | 1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4810481 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4810482 | 0.94[JPT][hapmap] |
rs4812976 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4812977 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs4812979 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6017716 | 0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6032592 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6032606 | 1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes] |
rs6032610 | 1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs6032611 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6032619 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
rs6065909 | 0.82[AMR][1000 genomes] |
rs6065910 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6073955 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs6073969 | 0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6104398 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs62213344 | 0.88[AMR][1000 genomes];0.84[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
ZNF335 | Proximal transcriptional regulation |
UBE2C | Distal transcriptional regulation |
ZSWIM1 | Distal transcriptional regulation |
NEURL2 | Distal transcriptional regulation |
CTSA | Distal transcriptional regulation |
PLTP | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
NCOA5 | Distal transcriptional regulation |
SLC35C2 | Distal transcriptional regulation |
ACOT8 | Distal transcriptional regulation |
ZSWIM3 | Distal transcriptional regulation |
ENSG00000203346 | Distal transcriptional regulation |
SLC12A5 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
KAT6B | Distal transcriptional regulation |
TNNC2 | Distal transcriptional regulation |
SNX21 | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
MMP9 | Distal transcriptional regulation |
FTLP1 | Distal transcriptional regulation |
ZNF335 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014