SNP Report

Basic Infomation

Name	rs6017715 dbSNP
Location	chr:20,44599839
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 30)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs17576	0.94[JPT][hapmap]
rs1810323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2250889	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs2282073	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3746505	0.85[ASN][1000 genomes]
rs3746507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3746510	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3848716	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3848717	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3918249	0.94[JPT][hapmap]
rs4141957	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4810478	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4810480	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4810481	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4810482	0.94[JPT][hapmap]
rs4812976	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4812977	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4812979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6017716	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6032592	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6032606	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6032610	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6032611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6032619	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs6065909	0.82[AMR][1000 genomes]
rs6065910	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6073955	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6073969	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6104398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62213344	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZNF335	Proximal transcriptional regulation
UBE2C	Distal transcriptional regulation
ZSWIM1	Distal transcriptional regulation
NEURL2	Distal transcriptional regulation
CTSA	Distal transcriptional regulation
PLTP	Distal transcriptional regulation
PCIF1	Distal transcriptional regulation
ENSG00000204044	Distal transcriptional regulation
NCOA5	Distal transcriptional regulation
SLC35C2	Distal transcriptional regulation
ACOT8	Distal transcriptional regulation
ZSWIM3	Distal transcriptional regulation
ENSG00000203346	Distal transcriptional regulation
SLC12A5	Distal transcriptional regulation
ENSG00000240742	Distal transcriptional regulation
KAT6B	Distal transcriptional regulation
TNNC2	Distal transcriptional regulation
SNX21	Distal transcriptional regulation
ZNF335	Distal transcriptional regulation
MMP9	Distal transcriptional regulation
FTLP1	Distal transcriptional regulation
ZNF335	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)