SNP Report
Basic Infomation
| Name | rs17576 dbSNP |
|---|---|
| Location | chr:20,44640225 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs13969 | 0.83[EUR][1000 genomes] |
| rs2250889 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs3746507 | 0.95[JPT][hapmap] |
| rs3746510 | 0.95[JPT][hapmap] |
| rs3761158 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3761159 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3848717 | 0.95[JPT][hapmap] |
| rs3848721 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3848722 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918240 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918249 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918251 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4810482 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4812979 | 0.95[JPT][hapmap] |
| rs6017715 | 0.94[JPT][hapmap] |
| rs6017721 | 0.82[EUR][1000 genomes] |
| rs6032611 | 0.95[JPT][hapmap] |
| rs6032619 | 0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6065910 | 0.95[JPT][hapmap] |
| rs6065913 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104398 | 0.84[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000203346 | Proximal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| MMP9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 24)
| eQTL related gene | Source |
|---|---|
| PLTP | seeQTL |
| TOX2 | SCAN |
| CTSA | SCAN |
| ARFGEF2 | SCAN |
| TOMM34 | SCAN |
| NCOA5 | SCAN |
| CARS2 | SCAN |
| ARID3B | SCAN |
| PHF20 | SCAN |
| FAM126B | SCAN |
| PICALM | SCAN |
| PPP2R5C | SCAN |
| MRFAP1 | SCAN |
| ATP5SL | SCAN |
| AP3S2 | SCAN |
| TSGA14 | SCAN |
| CUEDC2 | SCAN |
| TMEM62 | SCAN |
| IMMT | SCAN |
| PSMF1 | SCAN |
| SNX17 | SCAN |
| FLAD1 | SCAN |
| BTBD7 | SCAN |
| ANAPC7 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014