SNP Report
Name | rs17576   dbSNP |
---|---|
Location | chr:20,44640225 |
Allele | A/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs13969 | 0.83[EUR][1000 genomes] |
rs2250889 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
rs3746507 | 0.95[JPT][hapmap] |
rs3746510 | 0.95[JPT][hapmap] |
rs3761158 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs3761159 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3848717 | 0.95[JPT][hapmap] |
rs3848721 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3848722 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3918240 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3918249 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3918251 | 0.91[AMR][1000 genomes];0.84[EUR][1000 genomes] |
rs4810482 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4812979 | 0.95[JPT][hapmap] |
rs6017715 | 0.94[JPT][hapmap] |
rs6017721 | 0.82[EUR][1000 genomes] |
rs6032611 | 0.95[JPT][hapmap] |
rs6032619 | 0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
rs6065910 | 0.95[JPT][hapmap] |
rs6065913 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6104398 | 0.84[JPT][hapmap] |
Symbol | Regulation type |
---|---|
ENSG00000203346 | Proximal transcriptional regulation |
SLC12A5 | Distal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
NCOA5 | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
MMP9 | Distal transcriptional regulation |
MMP9 | RNA binding protein mediated regulation |
Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL related gene | Source |
---|---|
PLTP | seeQTL |
TOX2 | SCAN |
CTSA | SCAN |
ARFGEF2 | SCAN |
TOMM34 | SCAN |
NCOA5 | SCAN |
CARS2 | SCAN |
ARID3B | SCAN |
PHF20 | SCAN |
FAM126B | SCAN |
PICALM | SCAN |
PPP2R5C | SCAN |
MRFAP1 | SCAN |
ATP5SL | SCAN |
AP3S2 | SCAN |
TSGA14 | SCAN |
CUEDC2 | SCAN |
TMEM62 | SCAN |
IMMT | SCAN |
PSMF1 | SCAN |
SNX17 | SCAN |
FLAD1 | SCAN |
BTBD7 | SCAN |
ANAPC7 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014