SNP Report
Name | rs3848721   dbSNP |
---|---|
Location | chr:20,44633676 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11696767 | 0.85[EUR][1000 genomes] |
rs11696804 | 0.85[EUR][1000 genomes] |
rs11697325 | 0.85[EUR][1000 genomes] |
rs13040272 | 0.85[EUR][1000 genomes] |
rs17576 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2250889 | 0.81[ASN][1000 genomes] |
rs34109603 | 0.83[EUR][1000 genomes] |
rs3761158 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs3761159 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3848722 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3918240 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3918249 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs3918251 | 0.90[AMR][1000 genomes];0.86[EUR][1000 genomes] |
rs3933239 | 0.85[EUR][1000 genomes] |
rs4810482 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs56242234 | 0.84[EUR][1000 genomes] |
rs6017721 | 0.89[EUR][1000 genomes] |
rs6032619 | 0.81[ASN][1000 genomes] |
rs6065913 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6094237 | 0.82[EUR][1000 genomes] |
rs6104417 | 0.82[EUR][1000 genomes] |
rs6104418 | 0.85[EUR][1000 genomes] |
rs8113877 | 0.82[EUR][1000 genomes] |
Symbol | Regulation type |
---|---|
MMP9 | Proximal transcriptional regulation |
ENSG00000203346 | Distal transcriptional regulation |
NCOA5 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014