SNP Report
Basic Infomation
| Name | rs34109603 dbSNP |
|---|---|
| Location | chr:20,44626172 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696767 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11696804 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11697325 | 0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11698788 | 0.88[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs12479823 | 0.86[ASN][1000 genomes] |
| rs12479993 | 0.86[ASN][1000 genomes] |
| rs12480597 | 0.95[ASN][1000 genomes] |
| rs12481671 | 0.95[ASN][1000 genomes] |
| rs13040272 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13969 | 0.84[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1805088 | 0.95[ASN][1000 genomes] |
| rs20544 | 0.85[EUR][1000 genomes] |
| rs35300540 | 0.95[ASN][1000 genomes] |
| rs35567443 | 0.83[EUR][1000 genomes] |
| rs3746514 | 0.81[ASN][1000 genomes] |
| rs3761159 | 0.82[EUR][1000 genomes] |
| rs3848721 | 0.83[EUR][1000 genomes] |
| rs3848722 | 0.83[EUR][1000 genomes] |
| rs3918253 | 0.86[EUR][1000 genomes] |
| rs3918256 | 0.86[EUR][1000 genomes] |
| rs3918273 | 0.95[ASN][1000 genomes] |
| rs3918274 | 0.95[ASN][1000 genomes] |
| rs3933239 | 0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4812984 | 0.86[ASN][1000 genomes] |
| rs56242234 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57489591 | 0.86[ASN][1000 genomes] |
| rs58421100 | 0.95[ASN][1000 genomes] |
| rs58507857 | 0.95[ASN][1000 genomes] |
| rs60053896 | 0.95[ASN][1000 genomes] |
| rs60551459 | 0.86[ASN][1000 genomes] |
| rs6094237 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs6104417 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104418 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61088297 | 0.86[ASN][1000 genomes] |
| rs61393483 | 0.95[ASN][1000 genomes] |
| rs61601349 | 0.86[ASN][1000 genomes] |
| rs7271846 | 0.83[AFR][1000 genomes];0.88[EUR][1000 genomes] |
| rs73911143 | 0.95[ASN][1000 genomes] |
| rs73911144 | 0.95[ASN][1000 genomes] |
| rs8113877 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8114050 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8120493 | 0.95[ASN][1000 genomes] |
| rs8121146 | 0.83[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8123862 | 0.95[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MMP9 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014