SNP Report
Basic Infomation
| Name | rs35567443 dbSNP |
|---|---|
| Location | chr:20,44648361 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696767 | 0.84[EUR][1000 genomes] |
| rs11696804 | 0.84[EUR][1000 genomes] |
| rs11697325 | 0.84[EUR][1000 genomes] |
| rs11698788 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13040272 | 0.83[EUR][1000 genomes] |
| rs13969 | 0.81[EUR][1000 genomes] |
| rs20544 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2868364 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34109603 | 0.83[EUR][1000 genomes] |
| rs3761158 | 0.80[EUR][1000 genomes] |
| rs3918253 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918256 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3933239 | 0.84[EUR][1000 genomes] |
| rs56242234 | 0.83[EUR][1000 genomes] |
| rs57867828 | 1.00[ASN][1000 genomes] |
| rs6094237 | 0.83[EUR][1000 genomes] |
| rs6104417 | 0.86[EUR][1000 genomes] |
| rs6104418 | 0.83[EUR][1000 genomes] |
| rs8113877 | 0.83[EUR][1000 genomes] |
| rs8125780 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC12A5 | Proximal transcriptional regulation |
| ENSG00000240742 | Proximal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014