SNP Report
Name | rs35567443   dbSNP |
---|---|
Location | chr:20,44648361 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11696767 | 0.84[EUR][1000 genomes] |
rs11696804 | 0.84[EUR][1000 genomes] |
rs11697325 | 0.84[EUR][1000 genomes] |
rs11698788 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13040272 | 0.83[EUR][1000 genomes] |
rs13969 | 0.81[EUR][1000 genomes] |
rs20544 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2868364 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs34109603 | 0.83[EUR][1000 genomes] |
rs3761158 | 0.80[EUR][1000 genomes] |
rs3918253 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3918256 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3933239 | 0.84[EUR][1000 genomes] |
rs56242234 | 0.83[EUR][1000 genomes] |
rs57867828 | 1.00[ASN][1000 genomes] |
rs6094237 | 0.83[EUR][1000 genomes] |
rs6104417 | 0.86[EUR][1000 genomes] |
rs6104418 | 0.83[EUR][1000 genomes] |
rs8113877 | 0.83[EUR][1000 genomes] |
rs8125780 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
SLC12A5 | Proximal transcriptional regulation |
ENSG00000240742 | Proximal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
NCOA5 | Distal transcriptional regulation |
SLC12A5 | Distal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
ENSG00000203346 | Distal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014