SNP Report
Basic Infomation
| Name | rs2868364 dbSNP |
|---|---|
| Location | chr:20,44658296 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696804 | 0.93[MKK][hapmap] |
| rs11698788 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11699481 | 0.87[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs20544 | 0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35567443 | 0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918253 | 0.91[ASW][hapmap];0.81[GIH][hapmap];0.89[LWK][hapmap];0.86[MEX][hapmap];0.95[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918256 | 0.91[ASW][hapmap];0.81[GIH][hapmap];0.89[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3933239 | 0.93[MKK][hapmap] |
| rs57867828 | 1.00[ASN][1000 genomes] |
| rs6073990 | 0.81[EUR][1000 genomes] |
| rs8125780 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| SLC12A5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014