SNP Report
Basic Infomation
| Name | rs3918256 dbSNP |
|---|---|
| Location | chr:20,44640959 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696767 | 0.87[EUR][1000 genomes] |
| rs11696804 | 0.83[ASW][hapmap];0.89[CEU][hapmap];0.85[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11697325 | 0.87[EUR][1000 genomes] |
| rs11698788 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13040272 | 0.89[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes] |
| rs13969 | 0.82[EUR][1000 genomes] |
| rs20544 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2868364 | 0.91[ASW][hapmap];0.81[GIH][hapmap];0.89[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34109603 | 0.86[EUR][1000 genomes] |
| rs35567443 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3761158 | 0.83[EUR][1000 genomes] |
| rs3918253 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3933239 | 0.83[ASW][hapmap];0.89[CEU][hapmap];0.86[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes] |
| rs56242234 | 0.85[EUR][1000 genomes] |
| rs57867828 | 1.00[ASN][1000 genomes] |
| rs6094237 | 0.89[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs6104417 | 0.91[EUR][1000 genomes] |
| rs6104418 | 0.88[EUR][1000 genomes] |
| rs7271846 | 0.83[EUR][1000 genomes] |
| rs8113877 | 0.84[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs8114050 | 0.89[CEU][hapmap] |
| rs8125780 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000203346 | Proximal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| CD40 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| MMP9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014