SNP Report
Name | rs3918256   dbSNP |
---|---|
Location | chr:20,44640959 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11696767 | 0.87[EUR][1000 genomes] |
rs11696804 | 0.83[ASW][hapmap];0.89[CEU][hapmap];0.85[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs11697325 | 0.87[EUR][1000 genomes] |
rs11698788 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13040272 | 0.89[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes] |
rs13969 | 0.82[EUR][1000 genomes] |
rs20544 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2868364 | 0.91[ASW][hapmap];0.81[GIH][hapmap];0.89[LWK][hapmap];0.88[MEX][hapmap];0.95[MKK][hapmap];0.81[TSI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs34109603 | 0.86[EUR][1000 genomes] |
rs35567443 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3761158 | 0.83[EUR][1000 genomes] |
rs3918253 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs3933239 | 0.83[ASW][hapmap];0.89[CEU][hapmap];0.86[LWK][hapmap];0.98[MKK][hapmap];0.85[TSI][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.87[EUR][1000 genomes] |
rs56242234 | 0.85[EUR][1000 genomes] |
rs57867828 | 1.00[ASN][1000 genomes] |
rs6094237 | 0.89[CEU][hapmap];0.86[EUR][1000 genomes] |
rs6104417 | 0.91[EUR][1000 genomes] |
rs6104418 | 0.88[EUR][1000 genomes] |
rs7271846 | 0.83[EUR][1000 genomes] |
rs8113877 | 0.84[CEU][hapmap];0.87[EUR][1000 genomes] |
rs8114050 | 0.89[CEU][hapmap] |
rs8125780 | 0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000203346 | Proximal transcriptional regulation |
PCIF1 | Distal transcriptional regulation |
SLC12A5 | Distal transcriptional regulation |
ENSG00000204044 | Distal transcriptional regulation |
ENSG00000240742 | Distal transcriptional regulation |
NCOA5 | Distal transcriptional regulation |
CD40 | Distal transcriptional regulation |
ZNF335 | Distal transcriptional regulation |
MMP9 | Distal transcriptional regulation |
MMP9 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014