SNP Report
Basic Infomation
| Name | rs3761158 dbSNP |
|---|---|
| Location | chr:20,44634912 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11698788 | 0.81[EUR][1000 genomes] |
| rs17576 | 0.84[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs20544 | 0.82[EUR][1000 genomes] |
| rs2250889 | 0.99[ASN][1000 genomes] |
| rs35567443 | 0.80[EUR][1000 genomes] |
| rs3761159 | 0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3848721 | 0.90[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3848722 | 0.91[AFR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3918240 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3918249 | 0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3918253 | 0.83[EUR][1000 genomes] |
| rs3918256 | 0.83[EUR][1000 genomes] |
| rs4810482 | 0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6017721 | 0.89[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6032619 | 0.99[ASN][1000 genomes] |
| rs6065913 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6073990 | 0.85[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6094239 | 0.91[ASN][1000 genomes] |
| rs6130997 | 0.83[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MMP9 | Proximal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014