SNP Report
Basic Infomation
| Name | rs3918240 dbSNP |
|---|---|
| Location | chr:20,44635616 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 19)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696767 | 0.80[EUR][1000 genomes] |
| rs11696804 | 0.80[EUR][1000 genomes] |
| rs11697325 | 0.80[EUR][1000 genomes] |
| rs13040272 | 0.80[EUR][1000 genomes] |
| rs13969 | 0.81[EUR][1000 genomes] |
| rs17576 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2250889 | 0.82[ASN][1000 genomes] |
| rs3761158 | 0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3761159 | 0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3848721 | 0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3848722 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918249 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918251 | 0.90[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs3933239 | 0.80[EUR][1000 genomes] |
| rs4810482 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6017721 | 0.84[EUR][1000 genomes] |
| rs6032619 | 0.82[ASN][1000 genomes] |
| rs6065913 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6104418 | 0.80[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MMP9 | Proximal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014