SNP Report
Basic Infomation
| Name | rs2250889 dbSNP |
|---|---|
| Location | chr:20,44642406 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17576 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs2282073 | 1.00[CEU][hapmap] |
| rs3746507 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs3746510 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs3761158 | 0.99[ASN][1000 genomes] |
| rs3761159 | 0.82[ASN][1000 genomes] |
| rs3848717 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs3848721 | 0.81[ASN][1000 genomes] |
| rs3848722 | 0.82[ASN][1000 genomes] |
| rs3918240 | 0.82[ASN][1000 genomes] |
| rs3918249 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4141957 | 1.00[CEU][hapmap] |
| rs4810480 | 1.00[CEU][hapmap] |
| rs4810482 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs4812977 | 1.00[CEU][hapmap] |
| rs4812979 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs6017715 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs6017721 | 0.90[ASN][1000 genomes] |
| rs6017731 | 0.94[CHB][hapmap];0.93[AMR][1000 genomes] |
| rs6032592 | 1.00[CEU][hapmap] |
| rs6032606 | 1.00[CEU][hapmap] |
| rs6032610 | 1.00[CEU][hapmap] |
| rs6032611 | 1.00[CEU][hapmap];0.95[JPT][hapmap] |
| rs6032619 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6032629 | 0.90[AMR][1000 genomes] |
| rs6065910 | 1.00[CEU][hapmap];0.94[JPT][hapmap] |
| rs6065913 | 0.82[ASN][1000 genomes] |
| rs6073990 | 0.90[ASN][1000 genomes] |
| rs6094239 | 0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs6104398 | 1.00[CEU][hapmap];0.84[JPT][hapmap] |
| rs6130997 | 0.88[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000203346 | Proximal transcriptional regulation |
| ENSG00000204044 | Distal transcriptional regulation |
| PCIF1 | Distal transcriptional regulation |
| SLC12A5 | Distal transcriptional regulation |
| ENSG00000240742 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
| ZNF335 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| ENSG00000204044 | RNA binding protein mediated regulation |
| MMP9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014