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rVarBase
SNP Report
Basic Infomation
Name
rs6017721  
dbSNP
Location
chr:20,44616397
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs17576
0.82[EUR][1000 genomes]
rs2250889
0.90[ASN][1000 genomes]
rs3761158
0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3761159
0.88[EUR][1000 genomes]
rs3848721
0.89[EUR][1000 genomes]
rs3848722
0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3918240
0.84[EUR][1000 genomes]
rs3918249
0.83[EUR][1000 genomes]
rs4810482
0.86[EUR][1000 genomes]
rs6032619
0.90[ASN][1000 genomes]
rs6065913
0.84[EUR][1000 genomes]
rs6073990
0.82[ASN][1000 genomes]
rs6094239
0.82[ASN][1000 genomes]
rs6130997
0.80[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SLC12A5
Distal transcriptional regulation
ENSG00000204044
Distal transcriptional regulation
ENSG00000240742
Distal transcriptional regulation
PCIF1
Distal transcriptional regulation
NCOA5
Distal transcriptional regulation
ZNF335
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)