SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs17576	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs2250889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2282073	1.00[CEU][hapmap]
rs3746507	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs3746510	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs3761158	0.99[ASN][1000 genomes]
rs3761159	0.82[ASN][1000 genomes]
rs3848717	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs3848721	0.81[ASN][1000 genomes]
rs3848722	0.82[ASN][1000 genomes]
rs3918240	0.82[ASN][1000 genomes]
rs3918249	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4141957	1.00[CEU][hapmap]
rs4810480	1.00[CEU][hapmap]
rs4810482	0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs4812977	1.00[CEU][hapmap]
rs4812979	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs6017715	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs6017721	0.90[ASN][1000 genomes]
rs6017731	0.94[CHB][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes]
rs6032592	1.00[CEU][hapmap]
rs6032606	1.00[CEU][hapmap]
rs6032610	1.00[CEU][hapmap]
rs6032611	1.00[CEU][hapmap];0.95[JPT][hapmap]
rs6032629	0.92[AMR][1000 genomes]
rs6065910	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs6065913	0.82[ASN][1000 genomes]
rs6073990	0.90[ASN][1000 genomes]
rs6094239	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6104398	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs6130997	0.88[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MMP9	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)