SNP Report
Basic Infomation
| Name | rs4810482 dbSNP |
|---|---|
| Location | chr:20,44634550 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696767 | 0.82[EUR][1000 genomes] |
| rs11696804 | 0.82[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs11697325 | 0.82[EUR][1000 genomes] |
| rs13040272 | 0.82[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs17576 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2250889 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs3746507 | 0.95[JPT][hapmap] |
| rs3746510 | 0.95[JPT][hapmap] |
| rs3761158 | 0.96[AFR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs3761159 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3848717 | 0.95[JPT][hapmap] |
| rs3848721 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3848722 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918240 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918249 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918251 | 0.83[EUR][1000 genomes] |
| rs3933239 | 0.82[CEU][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs4812979 | 0.95[JPT][hapmap] |
| rs56242234 | 0.81[EUR][1000 genomes] |
| rs6017715 | 0.94[JPT][hapmap] |
| rs6017721 | 0.86[EUR][1000 genomes] |
| rs6032611 | 0.95[JPT][hapmap] |
| rs6032619 | 0.89[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs6065910 | 0.95[JPT][hapmap] |
| rs6065913 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6094237 | 0.82[CEU][hapmap] |
| rs6104398 | 0.84[JPT][hapmap] |
| rs6104418 | 0.82[EUR][1000 genomes] |
| rs8114050 | 0.86[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MMP9 | Proximal transcriptional regulation |
| ENSG00000203346 | Distal transcriptional regulation |
| MMP9 | Distal transcriptional regulation |
| NCOA5 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014