SNP Report

Basic Infomation

Name	rs13040272 dbSNP
Location	chr:20,44633111
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 61)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11696767	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11696804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11697325	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11698788	0.94[EUR][1000 genomes]
rs12479823	0.86[ASN][1000 genomes]
rs12479993	0.86[ASN][1000 genomes]
rs12480008	1.00[CHB][hapmap]
rs12480597	0.95[ASN][1000 genomes]
rs12481488	1.00[CHB][hapmap]
rs12481671	0.95[ASN][1000 genomes]
rs13969	0.89[EUR][1000 genomes]
rs16985435	1.00[CHB][hapmap]
rs1805088	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs20544	0.85[EUR][1000 genomes]
rs34109603	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35300540	0.95[ASN][1000 genomes]
rs35567443	0.83[EUR][1000 genomes]
rs3746514	0.81[ASN][1000 genomes]
rs3746516	1.00[CHB][hapmap]
rs3746518	1.00[CHB][hapmap]
rs3746519	1.00[CHB][hapmap]
rs3746520	1.00[CHB][hapmap]
rs3761159	0.84[EUR][1000 genomes]
rs3848721	0.85[EUR][1000 genomes]
rs3848722	0.85[EUR][1000 genomes]
rs3848723	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3848724	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3918240	0.80[EUR][1000 genomes]
rs3918249	0.82[CEU][hapmap]
rs3918253	0.89[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs3918256	0.89[CEU][hapmap];0.91[TSI][hapmap];0.88[EUR][1000 genomes]
rs3918273	0.95[ASN][1000 genomes]
rs3918274	0.95[ASN][1000 genomes]
rs3933239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4810482	0.82[CEU][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs4810483	1.00[CHB][hapmap]
rs4812984	0.86[ASN][1000 genomes]
rs4812985	1.00[CHB][hapmap]
rs4812987	1.00[CHB][hapmap]
rs56242234	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57489591	0.86[ASN][1000 genomes]
rs58421100	0.95[ASN][1000 genomes]
rs58507857	0.95[ASN][1000 genomes]
rs60053896	0.95[ASN][1000 genomes]
rs6032636	1.00[CHB][hapmap];0.83[CHD][hapmap]
rs60551459	0.86[ASN][1000 genomes]
rs6065913	0.80[EUR][1000 genomes]
rs6094237	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6104417	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6104418	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61088297	0.86[ASN][1000 genomes]
rs61393483	0.95[ASN][1000 genomes]
rs61601349	0.86[ASN][1000 genomes]
rs7271846	0.85[EUR][1000 genomes]
rs73911143	0.95[ASN][1000 genomes]
rs73911144	0.95[ASN][1000 genomes]
rs8113877	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8114050	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.88[TSI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8120493	0.95[ASN][1000 genomes]
rs8121146	1.00[ASN][1000 genomes]
rs8123862	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
MMP9	Proximal transcriptional regulation
MMP9	Distal transcriptional regulation
ENSG00000203346	Distal transcriptional regulation
NCOA5	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 4)

eQTL related gene	Source
CTSA	SCAN
ARFGEF2	SCAN
TOMM34	SCAN
NCOA5	SCAN