SNP Report
Basic Infomation
| Name | rs4812987 dbSNP |
|---|---|
| Location | chr:20,44673245 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 30)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11696804 | 1.00[CHB][hapmap] |
| rs12479662 | 0.83[ASN][1000 genomes] |
| rs12480008 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs12480918 | 0.83[ASN][1000 genomes] |
| rs12480942 | 0.83[ASN][1000 genomes] |
| rs12481488 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs13040272 | 1.00[CHB][hapmap] |
| rs16985435 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs16991024 | 0.86[EUR][1000 genomes] |
| rs16991026 | 1.00[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs1805088 | 1.00[CHB][hapmap] |
| rs2425750 | 1.00[YRI][hapmap] |
| rs35804246 | 0.83[ASN][1000 genomes] |
| rs3746516 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs3746517 | 0.83[ASN][1000 genomes] |
| rs3746518 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs3746519 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs3746520 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs3848723 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs3848724 | 1.00[CEU][hapmap];1.00[CHB][hapmap] |
| rs3933239 | 1.00[CHB][hapmap] |
| rs4810483 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4812985 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs4812986 | 1.00[CEU][hapmap];0.83[ASN][1000 genomes] |
| rs58572087 | 0.83[ASN][1000 genomes] |
| rs59253654 | 0.83[ASN][1000 genomes] |
| rs6032636 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes] |
| rs8113877 | 1.00[CHB][hapmap] |
| rs8114050 | 1.00[CHB][hapmap] |
| rs8123862 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCOA5 | Distal transcriptional regulation |
| SLC12A5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014