SNP Report

Basic Infomation

Name	rs35804246 dbSNP
Location	chr:20,44671880
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 49)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11696784	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12479662	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12479764	1.00[AFR][1000 genomes]
rs12479823	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12479993	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs12480008	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12480045	1.00[AFR][1000 genomes]
rs12480597	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12480744	1.00[AFR][1000 genomes]
rs12480874	1.00[AFR][1000 genomes]
rs12480918	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12480942	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12481093	1.00[AFR][1000 genomes]
rs12481120	1.00[AFR][1000 genomes]
rs12481488	0.81[EUR][1000 genomes]
rs12481671	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16985435	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16991024	0.81[EUR][1000 genomes]
rs16991026	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs16991062	1.00[AFR][1000 genomes]
rs16991072	1.00[AFR][1000 genomes]
rs1805088	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2868365	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs35300540	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3746514	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3746516	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3746517	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3746518	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3746519	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3746520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3848723	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3848724	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3901163	1.00[AFR][1000 genomes]
rs3918273	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3918274	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4810483	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812984	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4812985	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812986	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4812987	0.83[ASN][1000 genomes]
rs4812989	1.00[AFR][1000 genomes]
rs57489591	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs58572087	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59253654	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6032636	0.81[EUR][1000 genomes]
rs60551459	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61088297	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs61601349	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9509	0.82[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
SLC12A5	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)