SNP Report
Basic Infomation
| Name | rs4812989 dbSNP |
|---|---|
| Location | chr:20,44694568 |
| Allele | T/G/A |
LD-proxy of rSNPs(r2>0.8) (count: 52)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485438 | 1.00[CHB][hapmap] |
| rs11086996 | 1.00[CHB][hapmap] |
| rs11569314 | 1.00[CHB][hapmap] |
| rs11696784 | 1.00[AFR][1000 genomes] |
| rs12479764 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12479871 | 1.00[CEU][hapmap] |
| rs12479993 | 1.00[AFR][1000 genomes] |
| rs12480008 | 1.00[AFR][1000 genomes];0.88[AMR][1000 genomes] |
| rs12480045 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12480597 | 1.00[AFR][1000 genomes] |
| rs12480744 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12480874 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12481093 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12481120 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs12481488 | 1.00[CHB][hapmap];0.88[AMR][1000 genomes] |
| rs16991024 | 0.88[AMR][1000 genomes] |
| rs16991026 | 1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs16991058 | 1.00[CHB][hapmap] |
| rs16991062 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16991072 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17841916 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[AMR][1000 genomes] |
| rs1805088 | 1.00[AFR][1000 genomes] |
| rs1950174 | 1.00[CHB][hapmap] |
| rs2206892 | 1.00[CHB][hapmap] |
| rs2868365 | 1.00[AFR][1000 genomes] |
| rs35300540 | 1.00[AFR][1000 genomes] |
| rs35804246 | 1.00[AFR][1000 genomes] |
| rs3746514 | 1.00[AFR][1000 genomes] |
| rs3746516 | 1.00[AFR][1000 genomes] |
| rs3746517 | 1.00[AFR][1000 genomes] |
| rs3746518 | 1.00[AFR][1000 genomes] |
| rs3746519 | 1.00[AFR][1000 genomes] |
| rs3746520 | 1.00[CHB][hapmap];1.00[AFR][1000 genomes] |
| rs3848723 | 1.00[AFR][1000 genomes] |
| rs3848724 | 1.00[AFR][1000 genomes] |
| rs3901163 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3918273 | 1.00[AFR][1000 genomes] |
| rs3918274 | 1.00[AFR][1000 genomes] |
| rs4812984 | 1.00[AFR][1000 genomes] |
| rs4812985 | 1.00[AFR][1000 genomes] |
| rs4812988 | 1.00[CHB][hapmap] |
| rs4812996 | 1.00[CEU][hapmap] |
| rs4813006 | 1.00[CEU][hapmap] |
| rs57489591 | 1.00[AFR][1000 genomes] |
| rs59253654 | 1.00[AFR][1000 genomes] |
| rs6032636 | 0.94[AMR][1000 genomes] |
| rs6032637 | 1.00[CHB][hapmap] |
| rs6032638 | 1.00[CHB][hapmap] |
| rs6032653 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60551459 | 1.00[AFR][1000 genomes] |
| rs61088297 | 1.00[AFR][1000 genomes] |
| rs8125495 | 1.00[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| NCOA5 | Distal transcriptional regulation |
| NCOA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014